SNP Profiles of MO 9 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
1._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
2._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
3._GC-05-119-3-21	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
4._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
5._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
6._GC-05-071-2-22	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
7._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
8._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
9._MO_9	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AG	CT	AG	CT
10._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
11._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
12._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
13._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
14._GC-05-119-3-21	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
15._GC-05-071-2-22	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
16._GC-05-071-2-22	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
17._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
18._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
19._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
20._MO_9	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	GG	CC	AG	CT
21._RUQ_1691	_	_	CG	_	_	_	_	TT	_	CC	GG	_	AG	_
22._RUQ_1691	GG	GG	CG	AG	AA	AC	GG	AA	_	_	GG	GG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
1._MO_9	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
2._GC-05-071-2-22	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
3._GC-05-119-3-21	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
4._GC-05-071-2-22	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
5._GC-05-071-2-22	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
6._GC-05-071-2-22	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
7._MO_9	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
8._MO_9	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
9._MO_9	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC	AG
10._MO_9	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
11._GC-05-119-3-21	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
12._MO_9	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
13._GC-05-119-3-21	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
14._GC-05-119-3-21	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
15._GC-05-071-2-22	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
16._GC-05-071-2-22	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
17._MO_9	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
18._MO_9	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
19._MO_9	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
20._MO_9	AA	CG	CT	CC	GG	GG	AA	TT	CC	GG	GT	CT	CC	AA
21._RUQ_1691	_	_	_	_	GG	GG	AA	_	CC	GG	_	_	CC	_
22._RUQ_1691	AA	CG	AG	GG	CC	CC	_	AA	CC	GG	AC	_	CC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
1._MO_9	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
2._GC-05-071-2-22	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
3._GC-05-119-3-21	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
4._GC-05-071-2-22	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
5._GC-05-071-2-22	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
6._GC-05-071-2-22	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
7._MO_9	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
8._MO_9	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
9._MO_9	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X	X_X
10._MO_9	GG	AA	CC	AA	_	AC	CC	GT	AC	AA	GG	X_X	X_X	X_X
11._GC-05-119-3-21	GG	AA	CC	AA	CC	_	CC	GT	AC	AA	GG	X_X	X_X	X_X
12._MO_9	GG	AA	CC	AA	CC	_	CC	GT	AC	AA	GG	X_X	X_X	X_X
13._GC-05-119-3-21	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
14._GC-05-119-3-21	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
15._GC-05-071-2-22	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
16._GC-05-071-2-22	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
17._MO_9	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
18._MO_9	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
19._MO_9	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
20._MO_9	GG	AA	CC	AA	CC	AA	CC	GT	AC	AA	GG	X_X	X_X	X_X
21._RUQ_1691	_	_	_	AA	_	_	_	_	AC	_	_	X_X	X_X	X_X
22._RUQ_1691	GG	AA	GG	AA	GG	AC	GG	AC	AC	AA	GG	X_X	X_X	X_X

Input profile: MO_9

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._MO_9

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 5

Dapeng Zhang, 2016

2._MO_9 GC-05-071-2-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

3._MO_9 GC-05-119-3-21

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._MO_9 GC-05-071-2-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

5._MO_9 GC-05-071-2-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._MO_9 GC-05-071-2-22

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

7._MO_9

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._MO_9

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 3 > FP

Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 4 > FP

Dapeng Zhang, 2016

10._MO_9

63.2 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D835

Dapeng Zhang, 2016

11._MO_9 GC-05-119-3-21

61.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

12._MO_9

61.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 3 > FP

Dapeng Zhang, 2016

13._MO_9 GC-05-119-3-21

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

14._MO_9 GC-05-119-3-21

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._MO_9 GC-05-071-2-22

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._MO_9 GC-05-071-2-22

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

17._MO_9

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

18._MO_9

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5222 1 > FP

Dapeng Zhang, 2016

19._MO_9

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 2

Dapeng Zhang, 2016

20._MO_9

61.5 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5321 4 > FP

Dapeng Zhang, 2016

21._MO_9 RUQ_1691

57.7 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

22._MO_9 RUQ_1691

35.3 %
34 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25